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Posts from the ‘Data Collection & Analysis’ Category

Where Will the Next Generation of Scientists Come From?

The Global Learning and Observations to Benefit the Environment (GLOBE) Program is an international science and education program that provides students and the public worldwide with the opportunity to participate in data collection and the scientific process.

GLOBE

GLOBE has a huge impact in schools around the world.

Its mission is to promote the teaching and learning of science, enhance community environmental literacy and stewardship, and provide research quality environmental observations.  The GLOBE program works closely with agencies such as NASA to do projects like validation of SMAP data and the Urban Heat Island/Surface Temperature Student Research Campaign.  The figure below shows the impact GLOBE is having in schools worldwide.

Dixon Butler, former GLOBE Chief Scientist, is excited about the recent African project GLOBE is now participating in called the TAHMO project.  He says, “Right now, in Kenya and Nigeria, GLOBE schools are putting in over 100 new  mini-weather stations to collect weather data, and all that usable data will flow into the GLOBE database.”

GLOBE

Participating in real science at a young age gets youth more ready to be logical, reasoning adults.

Why Use Kids to Collect Data?

Dixon says kids do a pretty good job taking research quality environmental measurements.  Working with agencies like NASA gets them excited about science, and participating in real science at a young age gets them more ready to be logical, reasoning adults.  He explains, “The 21st century requires a scientifically literate citizenry equipped to make well-reasoned choices about the complex and rapidly changing world. The path to acquiring this type of literacy goes beyond memorizing scientific facts and conducting previously documented laboratory experiments to acquiring scientific habits of mind through doing hands-on, observational science.”

Dixon says when GLOBE started, the plan was to have the kids measure temperature.  But one science teacher, Barry Rock, who had third grade students using Landsat images to do ozone damage observations, called the White House and said, “Kids can do a lot more than measure temperature.” He gave a presentation at the White House where he showed a video of two third grade girls looking at Landsat imagery. They were discussing their tree data, and at one point, one said to the other, ‘That’s in the visible. Let’s look at it in the false color infrared.’  At that point, Barry became the first chief scientist of GLOBE, and he helped set up the science and the protocols that got the program started.

GLOBE

GLOBE uses online and in-person training and protocols to be sure the students’ data is research quality.

Can GLOBE Data be Used by Scientists?

GLOBE uses online and in-person training and protocols to be sure the students’ data is research quality.  Dixon explains, “There was a concern that these data be credible, so the idea was to create an intellectual chain of custody where scientists would write the protocols in partnership with an educator so they would be written in an educationally appropriate way.  Then the teachers would be trained on those protocols. The whole purpose is to be sure scientists have confidence that the data being collected by GLOBE is useable in research.”

Today GLOBE puts out a Teacher’s’ Guide and the protocols have increased from 17 to 56.  The soil area went from just a temperature and moisture measurement to a full characterization.  Dixon says, “We’ve been trying to improve it ever since, and I think we’re getting pretty good at it.”  

GLOBE

GLOBE students were the only ones going around looking up at the sky doing visual categorization of clouds and counting contrails. It was just no longer being done, except by these students.

What About the Skeptics?

If you ask Dixon how he deals with skeptics of the data collected by the kids, he says, “I tell them to take a scientific approach.  Check out the data, and see if they’re good.  One year, a GLOBE investigator found a systematic error In U-tube maximum/minimum thermometers mounted vertically, which had been in use for over a century, that no one else found. The GLOBE data were good enough to look at and find the problem.  There are things the data are good for and things they’re not good for. Initially, we wanted these data to be used by scientists in the literature, and there have been close to a dozen papers, but I would argue that GLOBE hasn’t yet gotten to the critical mass of data that would make that easier.”

GLOBE did have enough cloud data, however, to be used in an important analysis of geostationary cloud data where the scientist compared GLOBE student data with satellite data Dixon adds, “GLOBE students were the only ones going around looking up at the sky doing visual categorization of clouds and counting contrails. It was just no longer being done, except by GlOBE students. Now GLOBE has developed the GLOBE Observer app that let’s everyone take and report cloud observations.”

GLOBE

Young minds need to experience the scientific approach of developing hypotheses, taking careful, reproducible measurements, and reasoning with data.

What’s the Future of GLOBE?

Dixon says GLOBE’s goal is to raise the next generation of intelligent constituents in the body politic. He says, “I thought about this a lot when I worked for the US Congress.  In addition to working with GLOBE, I now have a non-profit grant-making organization called YLACES with the objective of helping kids to learn science by doing science.  Young minds need to experience the scientific approach of developing hypotheses, taking careful, reproducible measurements, and reasoning with data. Inquiries should begin early and grow in quality and sophistication as learners progress in literacy, numeracy, and understanding scientific concepts. In addition to fostering critical thinking skills, active engagement in scientific research at an early age also builds skills in mathematics and communications. These kids will grow up knowing how to think scientifically. They’ll ask better questions, and they’ll be harder to fool.   I think that’s what the world needs, and I see the environment and science as the easiest path to get there.”

Learn more about GLOBE and its database here and about YLACES at www.ylaces.org.

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New Weather Station Technology in Africa-3

The Trans African Hydro and Meteorological Observatory (TAHMO) project expects to put 20,000 microenvironment monitors over Africa in order to understand the weather patterns which affect that continent, its water, and its agriculture. In the conclusion of our 3 part series, we  interview Dr. John Selker about his thoughts on the project.

TAHMO

The economics of weather data value may be going up because we’re reaching a cusp in terms of humanity’s consumption of food.

In your TEDx talk you estimate that US weather stations directly bring U.S. consumers  31 billion dollars in value per year. Can Africa see that same kind of return?

Even more.  The economics of weather data value may be going up because we’re reaching a cusp in terms of humanity’s consumption of food.  Africa, one could argue, is the breadbasket for this coming century.  Thus, the value of information about where we could grow what food could be astronomical.  It’s very difficult to estimate.  One application of weather data is crop insurance.  Right now, crop insurance is taking off across Africa. The company we’re working with has 180,000 clients just in Kenya.  When we talked about 31 billion dollars in the U.S., that is the value citizens report, but you need to add to that protection against floods, increased food production, water supply management, crop insurance and a myriad of other basic uses for weather data.  In Africa, the value of this type of protection alone pays for over 1,000 times the cost of the weather stations.

Another application for weather data is that in Africa, the valuation of land itself is uncertain. So if, because of weather station data, we find that a particular microclimate is highly valuable, suddenly land goes from having essentially no value to becoming worth thousands of dollars per acre.  It’s really difficult to estimate the impact the data will have, but it could very well end up being worth trillions of dollars.  We have seen this pattern take place in central Chile, where land went from about $200/hectare in 1998 to over $3,000/ha now due to the understanding that it was exceptionally suited to growing pine trees, which represented a change in land value exceeding $3 billion.

Does the effect of these weather stations go beyond Africa?

There’s limited  water falling on the earth, and if you can’t use weather data to invest in the right seeds, the right fertilizer, and plant at the right time in the right place, you’re not getting the benefit you should from having tilled the soil.  So for Africa the opportunity to improve yields with these new data is phenomenal.  

In terms of the world, the global market for calories is now here, so if we can generate more food production in Africa, that’s going to affect the price and availability of food around the world.  The world is one food community at this point, so an entire continent having inefficient production and ineffective structures costs us all.

TAHMO

If we can generate more food production in Africa, that’s going to affect the price and availability of food around the world.

You’re collecting data from Africa. Is it time to celebrate yet?

I think this is going to be one of those projects where we are always chilling the champagne and never quite drinking it.  It is such a huge scope trying to work across a continent.  So I would say we’ve got some stations all over Africa, we’re learning a lot, and we’ve got collaborators who are excited.  We have reason to feel optimistic.  It will be another five years before I’ll believe that we have a datastream that is monumental.  Right now we’re still getting the groundwork taken care of.  By September of this year we expect to have five hundred of stations in place, and then two years from now, over two thousand. This will be a level of observation that will transform the understanding of African weather and climate.

TAHMO

This is a project of hundreds of people across the world putting their hands and hearts in to make this possible.

How do you deal with the long wait for results?  

In science there is that sense you get when you want to know something, and you can see how to get there.  You have a theory, and you want to prove it.  It kind of captures your imagination.  It’s a combination of curiosity and the potential to actually see something happen in the world: to go from a place where you didn’t know what was going on to a place where you do know what’s going on.  I think about Linus Pauling, who made the early discoveries about the double helix.  He had in his pocket the X-ray crystallography data to show that the protein of life was in helical form, and he said, “In my pocket, I have what’s going to change the world.”  When we realized the feasibility of TAHMO, we felt much the same way.”  

Sometimes in your mind, you can see that path: how you might change the world.  It may never be as dramatic as what Pauling did, but even a small contribution has that same excitement of wanting to be someone who added to the conversation, who added to our ability to live more gracefully in the world.  It’s that feeling that carries you along, because in most of these projects you have an idea, and then ten years later you say, “why was it that hard?”  

Things are usually much harder than your original conception, and that energy and curiosity really helps you through some of the low points in your projects.  So, curiosity has a huge influence on scientific progress.  Changing the world is always difficult, but the excitement, curiosity, and working with people, it all fits together to help us draw through the tough slogs.  In TAHMO, I cannot count the number of people who have urged us to keep the effort moving forward and given a lift just when we needed it most.  This is a project of hundreds of people across the world putting their hands and hearts in to make this possible.  Having these TAHMO supporters is an awesome responsibility and concrete proof of the generosity and optimism of the human spirit.

Learn how you can help TAHMO.

New Weather Station Technology in Africa (Part 2)

Weather data improve the lives of many people. But, there are still parts of the globe, such as Africa, where weather monitoring doesn’t exist (see part 1). John Selker and his partners intend to remedy the problem through the Trans African Hydro Meteorological Observatory (TAHMO).  Below are some challenges they face.

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TAHMO aims to deploy 20,000 weather stations across the continent of Africa in order to fill a hole that exists in global climate data.

Big Data, Big Governments, and Big Unknowns

Going from an absence of data to the goal of 20,000 weather stations offers hope for positive changes. However, Selker is still cautious. “Unintended consequences are richly expressed in the history of Africa, and we worry about that a lot. It’s an interesting socio-technical problem.”  This is why Selker and others at TAHMO are asking how they can bring this technology to Africa in a way that fits with their cultures, independence, and the autonomy they want to maintain. 

TAHMO works with the government in each country stations are deployed in; negotiating agreements and making sure the desires of each recipient country are met. Even with agreements in place, the officials in each country will do what is in the best interest of the people: a gamble in countries where corruption is a factor which must be addressed. Selker illustrates this point by recalling an instance in 1985 when he witnessed a corrupt government official take an African farmer’s land because the value had increased due to a farm-scale water development project.

Most TAHMO weather stations are hosted and maintained by a local school, making it available as an education tool for teachers to use to teach about climate and weather. Data from TAHMO are freely available to the government in the country where the weather station is hosted, researchers who directly request data, and to the school hosting and maintaining the weather station. Commercial organizations will be able to purchase the data, and the profits will be used to maintain and expand the infrastructure of TAHMO.

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Selker says it’s all about collaboration.

Terrorism, Data, and Open Doors

“When I wanted to go out and put in weather stations, my wife simply said, ‘no, you will not go to Chad.’ … because it is Boko Haram central,” Selker says.

The Boko Haram— a terrorist organization that has pledged allegiance to ISIS— creates an uncommon hurdle. Currently the Boko Haram is most active in Nigeria, but has made attacks in Chad, Cameroon, and Niger.

Selker also mentioned similar issues with ISIS, “When ISIS came through Mali, the first thing they did is destroy all the weather stations. So they have no weather data right now in Mali.” Acknowledging the need for security, he adds, “we’re  completing the installation of  eight stations [in Mali] in April.”

“We have good contacts [in Nigeria] and they’re working hard to get permission to put up stations right now in that area. We’ve shipped 15 stations which are ready to install. With these areas we can’t go visit, it’s all about collaboration. It’s about partners and people you know. We have a partnership with a tremendous group of Africans who are really the leading edge of this whole thing.”

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Most TAHMO weather stations are hosted and maintained by a local school.

A Hopeful Future

Despite the challenges of getting this large-scale research network off the ground, Selker and his group remain hopeful.  About his weather data he says, “It’s not glamorous stuff, you won’t see it on the cover of magazines, but these are the underpinnings of a successful society.”

Selker optimistically adds, “We are in a time of incredible opportunity.”

Learn more about TAHMO

Next Week:  Read an interview with Dr. John Selker on his thoughts about TAHMO.

Best Research Instrument Hacks

Sometimes, brilliant ideas are born out of necessity.  We wanted to highlight innovative ways people have modified their instrumentation to fit their research needs.  Here, Georg von Unold, founder and president of UMS (now METER) illustrates ingenuity in a story that inspired the invention of the first UMS tensiometer and what could be one of the greatest scientific instrument hacks of all time.

Instrument hacks

The Bavarian Alps

An Early Penchant for Ingenuity

In 1986, graduating German students were required to join the military or perform civil service.  Von Unold chose to do a civil service project investigating tree mortality in the alpine region of the Bavarian Mountains.  He explains, “We were trying to understand pine tree water stress in a forest decline study related to storms in certain altitudes where trees were inexplicably falling over. The hypothesis was that changing precipitation patterns had induced water stress.”  

To investigate the problem, von Unold’s research team needed to find tensiometers that could measure the water stress of plants in the soil, which was not easy. The tensiometers von Unold found were not able to reach the required water potential without cavitating, so he decided to design a new type of tensiometer.  He says, “I showed my former boss the critical points. It must be glued perfectly, the ceramic needed defined porosity, a reliable air reference access, and water protection of the pressure transducer. I explained it with a transparent acrylic glass prototype to make it easier to understand. At a certain point my boss said, “Okay, please stop. I don’t understand much about these things, but you can make those on your own.”

Instrument hacks

Two snorkels protected a data logger predecessor from relative humidity.

Snorkels Solve a Research Crisis

The research team used those tensiometers (along with other chemical and microbial monitoring) to investigate why trees only in the precise altitude of 800 to 1100 meters were dying. One challenge facing the team was that they didn’t have access to anything we might call a data logger today.  Von Unold says, “We did have a big process machine from Schlumberger that could record the sensors, but it wasn’t designed to be placed in alpine regions where maximum winter temperatures reached -30℃ or below. We had to figure out how to protect this extremely expensive machine, which back then cost more than my annual salary.“

Von Unold’s advisor let him use the machine, cautioning him that the humidity it was exposed to could not exceed 80%, and the temperature must not fall below 0℃.  As von Unold pondered how to do this, he had an idea. Since the forest floor often accumulated more than a meter of snow, he designed an aluminum box with two snorkels that would reach above the snow.  The snorkels were guided to a height of two meters.  Using these air vents, he sucked a small amount of cold, dry air into the box. Then, he took his mother’s hot iron, bought a terminal switch to replace the existing one (so it turned on in the range of 0-30℃), and mounted a large aluminum plate on the iron’s metal plate to better distribute the heat.

Von Unold says, “Pulling in the outside air and heating it worked well. The simple technique reduced the relative humidity and controlled the temperature inside the box. Looking back, we were fortunate there wasn’t condensing water and that we’d selected a proper fan and hot iron. We didn’t succeed entirely, as on hot summer days it was a bit moist inside the box, but luckily, the circuit boards took no damage.”

Instrument hacks

Tree mortality factors were only found at the precise altitude where fog accumulated.

Finding Answers

Interestingly, the research team discovered there was more to the forest decline story than they thought. Fog interception in this range was extremely high, and when it condensed on the needles, the trees absorbed more than moisture.  Von Unold explains, “In those days people of the Czech Republic and former East Germany burned a lot of brown coal for heat. The high load of sulphur dioxide from the coal reduced frost resistivity and damaged the strength of the trees, producing water stress.  These combined factors were only found at the precise altitude where the fog accumulated, and the weakened trees were no match for the intense storms that are sometimes found in the Alps.”  Von Unold says once the East German countries became more industrialized, the problem resolved itself because the people stopped burning brown coal.

Share Your Hacks with Us

Do you have an instrument hack that might benefit other scientists?  Send your idea to kcampbell@metergroup.com.

German Researchers Directly Measure Climate Change Effects Using TERENO Lysimeters

In Germany, scientists are measuring the effects of tomorrow’s climate change with a vast network of 144 large lysimeters.

lysimeters

The goal of these lysimeters is to measure energy balance, water flux and nutrition transport, emission of greenhouse gases, biodiversity, and solute leaching into the groundwater.

In 2008, the Karlsruhe Institute of Technology began to develop a climate feedback monitoring strategy at the Ammer catchment in Southern Bavaria. In 2009, the Research Centre Juelich Institute of Agrosphere, in partnership with the Helmholtz-Network TERENO (Terrestrial Environmental Observatories) began conducting experiments in an expanded approach.  

Throughout Germany, they set up a network of 144 large lysimeters with soil columns from various climatic conditions at sites where climate change may have the largest impact.  In order to directly observe the effects of simulated climate change, soil columns were taken from higher altitudes with lower temperatures to sites at a lower altitude with higher temperatures and vice versa. Extreme events such as heavy rain or intense drought were also experimentally simulated.

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Lysimeter locations in Germany

Georg von Unold, whose company (formerly UMS, now METER) built and installed the lysimeters comments on why the project is so important. “From a scientific perspective, we accept changes for whatever reason they may happen, but it is our responsibility to carefully monitor and predict how these changes cause floods, droughts, and disease. We need to be prepared to react if and before they affect us.”

How Big Are the Lysimeters?

Georg says that each lysimeter holds approximately 3,000 kilograms of soil and has to be moved under compaction control with specialized truck techniques.  He adds,The goal of these lysimeters is to measure energy balance, water flux and nutrition transport, emission of greenhouse gases, biodiversity, and solute leaching into the groundwater. Researchers measure the conditions of water balance in the natural soil surrounding the lysimeters, and then apply those same conditions inside the lysimeters with suction ceramic cups that lay across the bottom of the lysimeter.  These cups both inject and take out water to mimic natural or artificial conditions.”

lysimeters

Researchers use water content sensors and tensiometers to monitor hydraulic conditions inside the lysimeters.

Researchers monitor the new climate situation with microenvironment monitors and count the various grass species to see which types become dominant and which might disappear. They use water content sensors and tensiometers to monitor hydraulic conditions inside the lysimeters. The systems also use a newly-designed system to inject CO2 into the atmosphere around the plants and soil to study increased carbon effects.  Georg says, “We developed, in cooperation with the HBLFA Raumberg Gumpenstein, a new, fast-responding CO2 enrichment system to study CO2 from plants and soil respiration. We analyze gases like CO2, oxygen, and methane. The chambers are rotated from one lysimeter to another, working 24 hours, 7 days a week.  Each lysimeter is exposed only for a few minutes so as not to change the natural environment.”

Next week:  Read about the intense precision required to move the soil-filled lysimeters, how problems are prevented, and how the data is used by scientists worldwide.

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Top Five Blog Posts in 2016

In case you missed them the first time around, here are the most popular Environmental Biophysics.org blog posts in 2016.

Lysimeters Determine if Human Waste Composting can be More Efficient

Top five blog posts Environmental biophysics

In Haiti, untreated human waste contaminating urban areas and water sources has led to widespread waterborne illness.  Sustainable Organic Integrated Livelihoods (SOIL) has been working to turn human waste into a resource for nutrient management by turning solid waste into compost.  Read more

Estimating Relative Humidity in Soil: How to Stop Doing it Wrong

Top five blog posts Environmental biophysics

Estimating the relative humidity in soil?  Most people do it wrong…every time.  Dr. Gaylon S. Campbell shares a lesson on how to correctly estimate soil relative humidity  from his new book, Soil Physics with Python, which he recently co-authored with Dr. Marco Bittelli.  Read more.

How Many Soil Moisture Sensors Do You Need?

Top five blog posts Environmental biophysics

“How many soil moisture sensors do I need?” is a question that we get from time to time. Fortunately, this is a topic that has received substantial attention by the research community over the past several years. So, we decided to consult the recent literature for insights. Here is what we learned.

Data loggers: To Bury, or Not To Bury

Top five blog posts Environmental biophysics

Globally, the number one reason for data loggers to fail is flooding. Yet, scientists continue to try to find ways to bury their data loggers to avoid constantly removing them for cultivation, spraying, and harvest.  Chris Chambers, head of Sales and Support at Decagon Devices always advises against it. Read more

Founders of Environmental Biophysics:  Champ Tanner

Top five blog posts Environmental biophysics

Image: http://soils.wisc.edu/people/history/champ-tanner/

We interviewed Gaylon Campbell, Ph.D. about his association with one of the founders of environmental biophysics, Champ Tanner.  Read more

And our three most popular blogs of all time:

Do the Standards for Field Capacity and Permanent Wilting Point Need to Be Reexamined?

Top five blog posts Environmental biophysics

We asked scientist, Dr. Gaylon S. Campbell, which scientific idea he thinks impedes progress.  Here’s what he had to say about the standards for field capacity and permanent wilting point.  Read more

Environmental Biophysics Lectures

Top five blog posts Environmental biophysics

During a recent semester at Washington State University a film crew recorded all of the lectures given in the Environmental Biophysics course. The videos from each Environmental Biophysics lecture are posted here for your viewing and educational pleasure.  Read more

Soil Moisture Sensors In a Tree?

Top five blog posts Environmental biophysics

Soil moisture sensors belong in the soil. Unless, of course you are feeling creative, curious, or bored. Then maybe the crazy idea strikes you that if soil moisture sensors measure water content in the soil, why couldn’t they be used to measure water content in a tree?  Read more

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Soil Sensors Help Thousand-Year-Old Levees Protect Residents of the Secchia River Valley

In Italy, on January of 2014, one of the Secchia river levees failed, causing millions of dollars in flood damage and two fatalities. Concerned with preventing similar disasters, scientists and geotechnical engineers are using soil sensors to investigate solutions in a project called, INFRASAFE (Intelligent monitoring for safe infrastructures) funded by the Emilia Romagna Region (Italy) on European Funds.  

Secchia river in Italy.

Secchia river in Italy (Image: visitsassuolo.it)

Professor Alberto Lamberti, Professor Guido Gottardi, Department of Civil, Chemical, Environmental, and Materials Engineering, University of Bologna, along with Prof. Marco Bittelli, University of Bologna professor of Soil and Environmental Physics, installed soil sensors along some transects of the Secchia river to monitor water potential and piezometric pressure.  They want to study properties of the compacted levee “soil”, during intense flooding.  Bittelli comments, “Rainfall patterns are changing due to climate change, and we are seeing more intense floods. There is a concern about monitoring levees so that we can, through studying the process, eventually create a warning system.”  

soil sensors

Trench for burying sensor cables.

What Are The Levees Made Of?

Amazingly, some of these levees are very old, built at the beginning of the second millennium to protect the Secchia valley population from floods. “These rudimentary barrages were the starting point of the huge undertakings, aiming at the regulation and stabilization of the river, which were gradually developed and expanded in the following centuries…building up a continuous chain all along the river.” (Marchii et. al., 1995)

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Vegetation in the Secchia River flood plain.

Unlike natural soil with horizons, the soil that makes up the levees is made up of extremely compact clay and other materials, which will pose challenges to the research team in terms of sensor installation.  The team will use soil sensors to determine when the compacted material that makes up the levees gets so saturated it becomes weak.  Bittelli says, “We are looking at the mechanical properties of the levees, but mechanical properties are strongly dependent on hydraulic properties, particularly soil water potential (or soil suction).  A change in water potential changes the mechanical properties and weakens the structure.”  This can happen either when a soil dries below an optimal limit or wets above it; the result is a weakened barrier that can fail under load.

soil sensors

Here the team uses an installation tool to install water content sensors.

Soil Sensors Present Installation Challenges

To solve the installation problems, the team will use a specialized installation tool to insert their water content sensors.  Bittelli says, “Our main challenge is to install sensors deep into the levees without disturbing the soil too much.  It’s very important to have this tool because clearly we cannot dig out a levee; we might be the instigator of a flood. So it was necessary for us to be able to install the sensors in a relatively small borehole.”  The researchers will install the sensors farther down than the current tool allows, so they are modifying it to go down to eight or ten meters.  Bittelli explains, “We used a prototype installation tool which is two meters long. We modified it in the shop and extended it to six meters to be able to install water content sensors at further depths.”

Another challenge facing the research team is how to install water potential sensors without disturbing the levee.  Marco explains, “We placed an MPS-6 into a cylinder of local soil prepared in the lab. A sort of a muffin made of soil with an MPS-6 inside. Then we lowered the cylinder into the borehole, installed the sensor inside, and then slid it down into the hole.  Our goal is to try and keep the structure of the soil intact. Since the cylinder is made of the same local soil, and it is in good contact with the borehole walls, hydraulic continuity will be established.”

soil sensors

Researchers placed a MPS-6 into a cylinder of local soil prepared in the lab.

Unlike installing water content sensors, matric potential sensors don’t need to be installed in undisturbed soil but only require good contact between the sensor and the bulk soil so liquid water can easily equilibrate between the two. The researchers are also contemplating using a small camera with a light so they can see from above if the installation is successful.  

Find Out More

The researchers will collect data at two experimental stations, one on the Po river, and one on the Secchia River. So far, the first installation was successfully performed, and data are collected from the website. Bitteli says the first installation included water content, temperature, and electrical conductivity sensors, water potential sensors, and tensiometers connected to a wireless network that will transmit all the data to a central office for analysis.

You can read more about this project and how it’s progressing here.

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Soil Moisture: An Important Parameter in Weather Monitoring

CoCoRaHS and Weather Monitoring

Each time a rain, hail, or snow storm crosses over your area, volunteers are taking precipitation measurements that are then used to analyze situations ranging from water resource availability to severe storm warnings.  

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CoCoRaHS precipitation data is used by many high profile organizations.

CoCoRaHS (Community Collaborative Rain, Hail and Snow Network) is a non-profit community-based network of volunteers of all ages and backgrounds working together to measure and map precipitation (rain, hail and snow).  Their data is used by the National Weather Service, meteorologists, hydrologists, emergency managers, city utilities, USDA, engineers, farmers, and more.  The organization will soon add another layer to their weather-monitoring efforts:  soil moisture measurement.

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In 1997, a localized flooding event in Fort Collins, Colorado was not well-warned due to lack of high-density precipitation observation.

Why Soil Moisture?

CoCoRaHS originated as the brain child of Nolan Doesken, the state climatologist of Colorado,  in 1997 in response to a localized flooding event in Fort Collins, CO that was not well-warned due to lack of high-density precipitation observations.  Ten years ago the Colorado Climate Center began a partnership with the National Integrated Drought Information System to establish the first regional drought early warning system. This particular system would serve the Upper Colorado River Basin and eastern Colorado.

From the beginning, Nolan was thinking about soil moisture.  He says, “When we first started this project, we identified one weakness of the current climate monitoring systems as the inability to quantitatively assess soil moisture.  Soil moisture is critical as it affects both short term weather forecasts and long-term seasonal forecasts, which are important for drought early warning and avoiding the agricultural consequences of too much or too little soil moisture.”It wasn’t until years later in the drought of 2012, which developed rapidly in the mid and late spring across the intermountain west and central plains that Nolan began planning to use CoCoRaHS as a vehicle for improving the soil moisture aspect of drought early warning.

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The organization intends to measure soil moisture using the gravimetric method.

How Will Volunteers Measure Soil Moisture?

Historically, CoCoRaHS has had success using low-cost measurement tools, stressing training and education, and using an interactive web-site to provide the highest quality data, and soil moisture will be no different.  The organization intends to measure soil moisture using the gravimetric method, where the user will take samples using a soil ring, dry samples in their own oven, and measure sample weight with an electronic scale. Peter Goble, a research assistant at Colorado State, has developed the measurement protocols that volunteers will follow.  He says, “We have installed several different types of soil sensors and tried gravimetric techniques in a field next to the center, and our experience has helped us set up a protocol that gets observers as educated as they can be by the time they take their measurements. The coring device we use is something that came about through trial and error. We were trying to reconcile the fact that we really wanted deeper root zone measurements in order to satisfy drought early-warning-system users, and the need for an inexpensive set of standardized materials that we could send out to observers in a kit.”  Volunteers will take soil samples at each point in a grid pattern, both at the surface and at the 7-9 inch level near the root zone.

What will Happen to the Data?

Initially, while the program is in its test phase, the data will be put in a spreadsheet and shared. However, once CoCoRaHS has finished sending this protocol around the nation to a group of alpha testers, they’ll set up a website infrastructure enabling volunteers to enter their VWC data directly into the CoCoRaHS website.

The need for soil moisture measurement in weather monitoring will outweigh the volunteers’ ability to measure, but there is a solution.

The need for soil moisture measurement in weather monitoring will outweigh the volunteers’ ability to measure, but there is a solution.

Why the Gravimetric Method?

Nolan says the challenge of water content is that soil is highly variable across space.  And if you add issues like sensor performance, improper installation of sensors, problems with soil contact, changes in bulk density, and soil compaction, you end up with inconsistent data.  The gravimetric method will avoid inconsistencies in spatial measurements and ensure higher quality data.

An Overwhelming Task

Nolan says the need for soil moisture measurement in weather monitoring will outweigh the volunteers’ ability to measure, but there is a solution. “People who use soil moisture data in atmospheric applications need high resolution, gridded information in every square kilometer across the country, but it will happen through modeling.  The measurements we take of precipitation and soil moisture will help in the refinement of the weather modules the atmospheric scientists will use as input to their weather prediction models.”

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Unraveling the Effects of Dams in Costa Rica (Part 2)

Dr. Rafael Muñoz-Carpena, Professor and University of Florida Water Institute Faculty Fellow and his research team are performing environmental studies on the Palo Verde National Park wetlands, trying to unravel the effects of the dams and how to revert some of the damage (see part one).  This week, find out how the researchers established connectivity in such a remote area,  some of the problems associated with the research, and how the team has addressed some unusual research issues.

Surface water elevation gauge station at the Bebedero river. Photo credit: Marco Pazmino Antonio

The Data Challenges of Remote Locations

The team began collecting data, as part of a joint effort with the Organization of Tropical Studies (OTS) research station. However, typical sensors require constant supervision and frequent visits, which imposed a burden on the station staff. There was also the risk of losing data if a sensor malfunction went undetected between monthly visits.  Rafael says, “Sometimes access was not possible due to floods or scheduling issues, so there was a high risk of losing information. To fix the problem (thanks to a National Science Foundation grant awarded to OTS) we integrated the sensors into a system that gives us remote access on a daily basis. This allows us to see the status of the instrumentation in near real-time, and thus coordinate with OTS to replace sensors if needed.”

Glimpse of the fauna in Palo Verde. Photo credit: Alice Alonso

Connectivity Issues

The team had a difficult time finding internet connectivity because the area is so remote. After trying several solutions, they finally built their own cell towers. The stations are now outfitted with cellular-enabled data loggers in conjunction with rain gauges and soil moisture and salinity sensors. The stations also include a standing well to measure surface and river water levels and monitor flooding stages. These are coupled with shallow water table wells, installed below the surface at 3-5 meters.  Rafael says, “These are tidal rivers, so we get a lot of activity up and down. We look at river data in conjunction with inland responses to try and get an idea of the influence of the river on the shallow groundwater nearby. All these data feed into a database that researchers and stakeholders can look at.”

Composite image contrasting the Palo Verde wetland in the 1986 and the wetland in recent days (2012) during the wet seasons. It highlights the encroachment of vegetation and  Typha domingensis (cattail), closing the patches of open water and reducing biodiversity and sites for birds feeding and nesting.

Composite image contrasting the Palo Verde wetland in the 1986 and the wetland in recent days (2012) during the wet seasons. It highlights the encroachment of vegetation and Typha domingensis (cattail), closing the patches of open water and reducing biodiversity and sites for birds feeding and nesting.

Internal Drivers

Dr. Muñoz-Carpena says because of the lag in the environmental response, it is not immediately clear to the general public that the wetland behavior is the result of what is happening upstream. People fail to see a connection. Therefore unraveling the data in a way that is clear is the first challenge of the project. He adds, “There are also internal drivers such as park management changes that compound the effects of the dams. Originally park managers tried invasive plant control with fire and cattle. Now they control the invasive with blade-rigged tractors that mow the cattail. But this is a highly expensive and temporary measure with recurrent costs, which provides no definitive solution to the cattail invasion. It’s important to understand the changes are not just the result of what’s happening locally. We need to find permanent solutions by tracking down the root of the problem.”

Endangered Jabiru in the Palo Verde National Park. Photo credit: Alice Alonso

Endangered Jabiru in the Palo Verde National Park. Photo credit: Alice Alonso

Plants are Not the Only Invasives

Cattails are not the only invaders that plague the wetlands. Rafael explains, “The other problem is that there is trafficking going on in the park. The men see these data logger boxes with silver antennas, and they think it’s a camera, so they break off the antennas. We are now putting up signs that say, ‘This is not the government watching you. This is research to protect your environment,’ but we are afraid the next time they will break the boxes and everything that goes with them. We won’t have the manpower or the financial resources to go down there and fix the data loggers for another six months.”

Example of a typical monitoring station: Surface and sub-surface water elevation and EC monitoring wells, and soil moisture and EC at 30 and 60 cm depths. Sensors connected to wireless cellular data logger for near real-time data access. Photo taken during the dry season.  Photo credit: Alice Alonso

Example of a typical monitoring station: Surface and sub-surface water elevation and EC monitoring wells, and soil moisture and EC at 30 and 60 cm depths. Sensors connected to wireless cellular data logger for near real-time data access. Photo taken during the dry season. Photo credit: Alice Alonso

What’s Next?

Over the last three years the team has collected a high-resolution database of fifteen to thirty minute timed steps, with over 100 sensors deployed in twelve spatially-distributed monitoring stations around the park. With that data, Rafael’s team is conducting exploratory types of analysis to study not only potential drivers of change, but also the cause of the drivers. They want to understand potential initiatives they could introduce to make the system more sustainable. Rafael says, “Once we develop integrated hydrological models and test them for the conditions in Costa Rica, hopefully we can understand the behavior in the past and forecast some different scenarios for the future.” Because many regions in the world suffer the impacts of interbasin water transfer, this research can inform future research policy at a broader scale.

Glimpse of the fauna in Palo Verde. Photo credit: Alice Alonso

Glimpse of the fauna in Palo Verde. Photo credit: Alice Alonso

See a map of the instrumentation network within the Palo Verde National Park.

Conceptual representation of the Palo Verde National Park in the context of the Tempisque watershed system.

Conceptual representation of the Palo Verde National Park in the context of the Tempisque watershed system.

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Unraveling the Effects of Dams in Costa Rica

Thirty years ago, in Costa Rica’s Palo Verde National Park, the wetlands flooded regularly and eco-tourists could view thousands of waterfowl. Today, invasive cattail plants cover portions of the wetland which has subsequently dried up and become colonized by hardwoods. Consequently, the number of birds has fallen dramatically.

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The number of birds on Palo Verde National Park has fallen dramatically. (Image: anywherecostarica.com)

Some people blame the dams built in the 1970’s which introduced hydrological power and created a large irrigation district in the remote region. Dr. Rafael Muñoz-Carpena, Professor and University of Florida Water Institute Faculty Fellow and his research team are performing environmental studies on the wetlands, trying to unravel the effects of the dams and how to revert some of the damage. Rafael explains, “We have a situation where modern engineering brought about social improvements, helpful renewable resources, and irrigation for abundant food production. But the resulting environmental degradation threatens a natural region in a country that depends on eco-tourism.”

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“A vast network of mangrove-rich swamp, lagoons, marshes, grassland, limestone outcrops, and forests comprise the 32,266 acre Palo Verde National Park.” (Image and text: anywherecostarica.com)

Are The Dams Responsible?

Dr. Muñoz-Carpena says because of lack of historical data it’s difficult to untangle and separate all the factors that have caused the environmental degradation. He adds, “Thirty years ago Palo Verde National Park was part of a large wetland system which was important to all of Central America because it contained many endangered species and was a wintering ground for migratory birds from North America. The Palo Verde field station on the edge of the wetland, operated by the Organization of Tropical Studies (OTS), attracted birdwatchers and wetland scientists from all over the world.”

In the 1970’s, with international funding, a dam was built in the mountains to collect water from the humid side of Costa Rica in order to generate hydroelectric power. It was clean, abundant, and strategically important.  With the water transferred to the dry side of the country, a large irrigation district was created to not only produce important crops to the region like rice and beans, but to distribute the land among small parcel settlers.

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“Birding is the principal draw of visitors to the park.” (Image and text: anywherecostarica.com)

Over the years, however, the wetland area slowly degraded to the point where its Ramsar Convention wetland classification is under question. Rafael says that understanding the causes of the degradation, the impacts of the human system, and how the natural and human systems are linked, is the big question of his research, and there are many factors to consider. “The release of the water, ground and surface water (over)use, agriculture, human development, and a larger population are all factors that could contribute to this degradation. Everything compounds in the downstream coastal wetlands. In collaboration with OTS and other partner organizations and universities, we are trying to disentangle these different drivers.”

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Understanding the causes of the degradation, the impacts of the human system, and how the natural and human systems are linked, is the big question of this research. (Image: anywherecostarica.com)

A Lack of Historical Data

One of the challenges the researchers face is to gather a sufficient amount of temporal and spatial information about what happened in the past forty years.  There are no public repositories of data to tap, and the information is spotty and hard to access. Rafael says, “Thanks to the collaboration of many local partners, we have been able to gather enough information to stitch together a large database out of a collection of non-systematic studies. The biggest challenge is to harmonize data that has been collected by different people in non-consistent ways.” This large database now contains the best long-term record possible for key hydrologic variables: river flow, groundwater stage, precipitation, and evapotranspiration.

The team is also using remote sensing sources to try to obtain time-series data for land-use and vegetation change, and will have those data ground truthed through instruments that are collecting similar time-series data. Rafael says, “The idea is to build a network that will allow us to overlap some of the previous data sources with our own, validate and upscale the ground data with remote sensing sources, enabling us to put together a detailed picture of what happened.”

Next Week:  Find out how the researchers established connectivity in such a remote area,  some of the problems associated with the research, and how the team has addressed those issues.

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