Skip to content

Posts tagged ‘soil moisture sensors’

The effects of environmental change on carbon cycling across the semi-arid west

Meet Christopher Beltz: G.A. Harris Fellowship winner

Increased nitrogen availability has the potential to alter many ecosystem functions—and is doing so already. This is due to the widespread response of net primary productivity (biomass) and soil respiration to increased nitrogen inputs into the biosphere.

Image of the grass lands with the sun setting

Grass Lands

Increases in nitrogen inputs are responsible for the acidification of soils, streams, and lakes and can affect forest and grassland productivity. Former G.A. Harris Fellowship winner, Christopher Beltz, a PhD student at Yale University, and his research team are examining two major drivers of carbon cycling: water and nitrogen. They want to understand the degree of limitation by both of these factors in the semi-arid ecosystems of the western United States and if that limitation changes by specific function.

Inspired by a mitigation pilot project

Beltz decided to study the effects of increased nitrogen on biomass after learning about the initiation of a major energy development in a sagebrush steppe system which caused declines in a local mule deer herd. He says, “One hypothesis was that the development significantly reduced available winter range forage and also impacted the use of it as the animals moved more quickly through the noisy environment. They wanted to see if the widespread application of fertilizers would potentially offset the loss of biomass and increase the forage quality. In the end, it was clear that the effect of nitrogen fertilization alone would have minimal to no effect. However we also noticed some variability in the results and that this variability seemed to be related to precipitation.”

Image of a scientist watering a field plot

Scientist Watering Field Plot

Beltz thought that if he could control the water in a system in addition to nitrogen, the results might be more consistent. Thus, Beltz and his research team broadcast nitrogen over the soil at three semi-arid grassland and shrubland/sagebrush sites in Colorado and Wyoming. He says, “The three sites essentially have a similar species list, annual precipitation, and annual temperature. However, temperature increases as you go south, and there are some differences in seasonality. The shrublands in the far north are the driest in the late summer which is typical of shrublands, where you see a large amount of precipitation occurring in the spring with a deficit in the summer. Larger taproots are beneficial in this system because they can access deeper water reservoirs.”

Measuring soil moisture improves understanding

The team used METER all-in-one weather stations, soil moisture sensors, and data loggers to monitor site conditions (i.e., precipitation, air temperature, soil moisture, and soil temperature) with high temporal resolution. Beltz explains, “We monitored soil moisture to understand whether our treatments were having any effect. We needed to know if the treatments actually altered the soil water conditions. With soil sensors in the ground, we could monitor that. We also monitored precipitation at the site level because of the fine scale spatial heterogeneity of precipitation in these systems. We weren’t confident we could obtain this with interpolation or modeling; we wanted site-specific values.”

Beltz uses this and other data to understand the interactive effects of nitrogen and water and also changes in water and nitrogen concentrations. He says, “We do a classic full-factorial manipulation outdoors. We perform the exact same manipulations with the same timing at each site. We measure a whole suite of variables that range from ecosystem structure to ecosystem function. This includes soil respiration, plant community, soil microbial communities (fungal and bacterial) using next-generation sequencing. We look at pools of soil carbon, and we do some fractionation so we can get at more labile and recalcitrant carbon compounds.”

METER weather station, ZL6 data logger, and soil moisture sensors

METER Weather Station, ZL6 Data Logger, and Soil Moisture Sensors to Receive and Process Data

Beltz says that monitoring soil moisture at multiple depths is important. “Our soil samples come from the same depths as the sensors so we can differentiate depth when we look at changes in bacterial or fungal composition. We then try to tie that to temperature and moisture. In 2018, we added an additional set of soil moisture sensors in our water treatment so we could start to quantify the effect in the soil depth that those water treatments were having. This helped explain a lot of what we were seeing.”

Nitrogen or water: which is the driver?

Beltz says the analyses are ongoing, but what they’ve learned so far is that an application of water equivalent to 12 millimeters precipitation penetrates to 10 centimeters of depth, and the effect of that application lasts three to seven days at all of their sites. He says, “Last year, we had an unseasonably large amount of precipitation at our northerly site. So for most of the season, the water treatments and the controls were identical in terms of water availability. That was a very helpful context for us because we started to see things that did not match the expected patterns.”

Looking at the big picture, he adds, “What’s come out of this is not what anybody expected. One major finding, at least in the initial analyses at two of our sites, is that it’s really the combined treatment of increased nitrogen and water that has the effect. This is not necessarily surprising in some ways, however it is the widespread lack of response of any other treatment combination that is extremely interesting.”

What it all means

Beltz sums up the implications of his research like this: “We know water availability and precipitation will shift globally due to climate change, as well as nitrogen deposition and availability. Our research is trying to tease apart the effects of two factors, at least within the western United States, that we know are likely to cause changes to the structure and function of dryland ecosystems. As we start to look at carbon balance or shifts in function or species competition of plant communities, we are finding out that it’s the combined effect of increased nitrogen and water that will cause a more major change as opposed to just one or the other. It’s important that we integrate that combination into models that often do not account for both of these factors.”

Beltz says in the future he’s interested in continuing his work in the carbon/nitrogen cycle world, and he wants to look at integrating nitrogen and water into carbon balance modeling efforts.

You can read more about the first study mentioned, regarding nitrogen fertilization in the sagebrush steppe, which was published in PloS ONE: https://doi.org/10.1371/journal.pone.0206563

Find out about his research here: christopherbeltz.com or via Twitter @BeltzEcology

Now accepting applications: 2019 G. A. Harris Fellowship

The Grant A. Harris Fellowship provides $60,000 worth of METER research instrumentation (six $10,000 awards) to graduate students studying any aspect of agricultural, environmental, or geotechnical science.

Apply now

Learn more

See ATMOS 41 weather station performance data

Learn more about measuring soil moisture. Download “The researcher’s complete guide to soil moisture“.

To understand how soil moisture and soil water potential work together, download “The researcher’s complete guide to water potential.”

Why does my soil moisture sensor read negative?

How is a negative number possible?

METER soil moisture sensors measure the dielectric constant of the substrate in which they are installed. They are designed to measure soil, which has a dielectric constant of around 5.

Researcher holding a TEROS 12 soil sensor in front of a wheat field

METERTEROS 12 soil moisture sensor

Water has a dielectric of approximately 80, so if we assume that a dry soil has a dielectric of 5 (VWC = 0.00 m3/m3), then changes to the bulk dielectric read by the soil moisture sensor will be attributable to changes in water content. If you read a METER sensor in air, which has a dielectric constant of 1, you will quite naturally get a negative number.   

Improving accuracy of dielectric soil moisture sensors

There are two common causes for negative readings on a METER soil moisture sensor:  

1) Poor contact with the soil resulting from improper installation or disturbance

Air gaps next to a sensor will contribute the lower dielectric of air to the measurement resulting in an underestimation of VWC. Air gaps can arise if enough care is not taken to pack soil around the sensor body to approximate native bulk density. Sensors that have been disturbed, such as having a cable tripped over, can also develop air gaps that can result in negative results in dry soils. (To reduce the possibility of air gaps when installing METER sensors, use the new TEROS borehole installation tool

2) A calibration that is inappropriate for the soil in which the sensor is installed

If the standard mineral calibration is used, an error of ~ 3-4% can be expected in METER sensor readings. Negative numbers can be observed in oven-dry soils (by definition a VWC of 0.0 m3/m3) down to ~ – 0.02 m3/m3 with no malfunction of the sensor. The dielectric constant of the soil is assumed to be 5 and this is a valid assumption in the majority of soils of primarily mineral composition. If your soil has a different dielectric constant, such as can occur in soils with high organic matter content, then the uncertainty in your measurements will increase. This is not a large problem because METER sensors can be calibrated to match a given soil with very little investment in resources.

Want more details?  

Watch our webinar titled Why Does My Sensor Read Negative below. This webinar is designed for those who use electromagnetic sensors (capacitance/TDR/FDR) to measure soil water content. Learn about the theory behind the measurements. Dr. Doug Cobos discusses:

  • What is volumetric water content?
  • Dielectric measurement theory basics
  • Dielectric mixing models
  • Why might a sensor read a negative VWC?
  • Can a sensor really have 2% VWC accuracy for all soils?
  • Sources of error in dielectric measurement methods
  • Improving accuracy of dielectric measurements

 

Take our Soil Moisture Master Class

Six short videos teach you everything you need to know about soil water content and soil water potential—and why you should measure them together.  Plus, master the basics of soil hydraulic conductivity.

Watch it now—>

Download the “Researcher’s complete guide to water potential”—>

Download the “Researcher’s complete guide to soil moisture”—>

Water holding and temperature patterns of canopy soil in an old-growth forest

The deadline is fast approaching to apply for the 2019 Grant A. Harris Fellowship. The fellowship awards $10,000 in METER research instrumentation to six U.S. or Canadian graduate students studying any aspect of agricultural, environmental, or geotechnical science.

Camila Tejo Haristoy using METER soil moisture and temperature sensors

(Image source: https://vimeo.com/69136931)

Camila Tejo Haristoy, former University of Washington grad student, was a Grant A. Harris Fellowship winner. She used METER soil moisture and temperature sensors to study the water holding and temperature patterns of canopy soil in an old-growth Sitka Spruce forest in Washington state. Sitka Spruce tree crowns contain large accumulations of organic matter known as “canopy soil”.  These accumulations provide substrate and habitat for a broad community of plants, insects, and other arboreal species. Using tree-climbing techniques, Camila installed soil moisture sensors in the canopy soils of spruce trees from an old-growth stand in the Olympic Peninsula, Washington.

This study characterized for the first time environmental conditions associated with soil mats within the crown of spruce trees, providing a framework for understanding the distribution and activity of epiphytic plants, nutrient dynamics, and associated canopy organisms.

Watch the documentary

Watch a fascinating 7-minute documentary of Camila’s interesting and exciting research. The documentary description: “Camila spends long rainy days climbing into treetops, taking temperature and moisture measurements, and collecting soil and plant samples. In the process, she interacts with a seldom seen, barely understood, and lushly beautiful environment.” (source https://vimeo.com/69136931)

Watch the video 

Recharge your research

Apply for the Grant A. Harris Fellowship today.

Download the “Researcher’s complete guide to soil moisture”—>

Download the “Researcher’s complete guide to water potential”—>

5 ways site disturbance impacts your data—and what to do about it

Lies we tell ourselves about site disturbance

When it comes to measuring soil moisture, site disturbance is inevitable. We may placate ourselves with the idea that soil sensors will tell us something about soil water even if a large amount of soil at the site has been disturbed. Or we might think it doesn’t matter if soil properties are changed around the sensor because the needles are inserted into undisturbed soil.

Rolling farm fields

The key to reducing the impact of site disturbance on soil moisture data is to control the scale of the disturbance.

The fact is that site disturbance does matter, and there are ways to reduce its impact on soil moisture data. Below is an exploration of site disturbance and how researchers can adjust their installation techniques to fight uncertainty in their data.

Non-disturbance methods don’t measure up—yet

During a soil moisture sensor installation, it’s important to generate the least amount of soil disturbance possible in order to obtain a representative measurement. Non-disturbance methods do exist, such as satellite, ground-penetrating radar, and COSMOS. However, these methods face challenges that make them impractical as a single approach to water content. The satellite has a large footprint, but generally measures the top 5-10 cm of the soil, and the resolution and measurement frequency is low. Ground-penetrating radar has great resolution, but it’s expensive, and data interpretation is difficult when a lower boundary depth is unknown. COSMOS is a ground-based, non-invasive neutron method that measures continuously and reaches deeper than a satellite over an area up to 800 meters in diameter. But it is cost-prohibitive in many applications and sensitive to both vegetation and soil, so researchers have to separate the two signals. These methods aren’t yet ready to displace soil moisture sensors, but they work well when used in tandem with the ground truth data that soil moisture sensors can provide.

Read more

Get more info on applied environmental research in our

Download the “Researcher’s complete guide to soil moisture”—>

Download the “Researcher’s complete guide to water potential”—>

Top Five Blog Posts in 2017

In case you missed them the first time around, here are the most popular Environmental Biophysics.org blog posts in 2017.

Soil Moisture Sensors: Why TDR vs. Capacitance May Be Missing the Point

Researcher holding a soil sensor in front of a field

Soil moisture sensor

Time Domain Reflectometry (TDR) vs. capacitance is a common question for scientists who want to measure volumetric water content (VWC) of soil, but is it the right question?  Dr. Colin S. Campbell, soil scientist, explains some of the history and technology behind TDR vs. capacitance and the most important questions scientists need to ask before investing in a sensor system. Read more

Get More From your NDVI Sensor

Looking up at tree branches from the ground

Modern technology has made it possible to sample Normalized Difference Vegetation Index (NDVI) across a range of scales both in space and in time, from satellites sampling the entire earth’s surface to handheld small sensors that measure individual plants or even leaves.  Read more

Improved Methods Save Money in Future Borehole Thermal Energy Storage Design

Image of a city with many buildings

Globally, the gap between the energy production and consumption is growing wider. To promote sustainability, University of California San Diego PhD candidate and ASCE GI Sustainability in Geotechnical Engineering committee member, Tugce Baser, Dr. John McCartney, Associate Professor, and their research team, Dr. Ning Lu, Professor at Colorado School of Mines and Dr. Yi Dong, Postdoctoral Researcher at Colorado School of Mines, are working on improving methods for borehole thermal energy storage (BTES), a system which stores solar heat in the soil during the summer months for reuse in homes during the winter. Read more

New Weather Station Technology in Africa

Happy students gathered around an ATMOS 41 weather station

Weather data, used for flight safety, disaster relief, crop and property insurance, and emergency services, contributes over $30 billion in direct value to U.S. consumers annually. Since the 1990’s in Africa, however, there’s been a consistent decline in the availability of weather observations. Read more

Electrical Conductivity of Soil as a Predictor of Plant Response

Corn stalks looking up at the sky from the ground

Plants require nutrients to grow, and if we fail to supply the proper nutrients in the proper concentrations, plant function is affected. Fertilizer in too high concentration can also affect plant function, and sometimes is fatal.  Read more

And our three most popular blogs of all time:

Estimating Relative Humidity in Soil: How to Stop Doing it Wrong

Image of a tree in the desert

Estimating the relative humidity in soil?  Most people do it wrong…every time.  Dr. Gaylon S. Campbell shares a lesson on how to correctly estimate soil relative humidity from his new book, Soil Physics with Python, which he recently co-authored with Dr. Marco Bittelli.  Read more

How to Measure Water Potential

Plants sprouting out of the sand

In the conclusion of our three-part water potential series, we discuss how to measure water potential—different methods, their strengths, and their limitations. Read more

Do the Standards for Field Capacity and Permanent Wilting Point Need to be Reexamined?

Image of rolling fields in front of mountains

We were inspired by this Freakonomics podcast, which highlights the bookThis Idea Must Die: Scientific Problems that are Blocking Progress, to come up with our own answers to the question:  Which scientific ideas are ready for retirement?  We asked scientist, Dr. Gaylon S. Campbell, which scientific idea he thinks impedes progress.  Here’s what he had to say about the standards for field capacity and permanent wilting point. Read more

Get info on applied environmental research in our

See weather sensor performance data for the ATMOS 41 weather station.

Explore which weather station is right for you.

Download the “Researcher’s complete guide to soil moisture”—>

Irrigation Curves—A Novel Irrigation Scheduling Technique

This week, guest author Dr. Michael Forster, of Edaphic Scientific Pty Ltd & The University of Queensland, writes about new research using irrigation curves as a novel technique for irrigation scheduling.

Corn field with a blue cloudy sky background

Growers do not have the time or resources to investigate optimal hydration for their crop. Thus, a new, rapid assessment is needed.

Measuring the hydration level of plants is a significant challenge for growers. Hydration is directly quantified via plant water potential or indirectly inferred via soil water potential. However, there is no universal point of dehydration with species and crop varieties showing varying tolerance to dryness. What is tolerable to one plant can be detrimental to another. Therefore, growers will benefit from any simple and rapid technique that can determine the dehydration point of their crop.

New research by scientists at Edaphic Scientific, an Australian-based scientific instrumentation company, and the University of Queensland, Australia, has found a technique that can simply and rapidly determine when a plant requires irrigation. The technique builds on the strong correlation between transpiration and plant water potential that is found across all plant species. However, new research applied this knowledge into a technique that is simple, rapid, and cost-effective, for growers to implement.

Current textbook knowledge of plant dehydration

The classic textbook values of plant hydration are field capacity and permanent wilting point, defined as -33 kPa (1/3 Bar) and -1500 kPa (15 Bar) respectively. It is widely recognized that there are considerable limitations with these general values. For example, the dehydration point for many crops is significantly less than 15 Bar.

Furthermore, values are only available for a limited number of widely planted crops. New crop varieties are constantly developed, and these may have varying dehydration points. There are also many crops that have no, or limited, research into their optimal hydration level. Lastly, textbook values are generated following years of intensive scientific research. Growers do not have the time, or resources, to completely investigate optimal hydration for their crop. Therefore, a new technique that provides a rapid assessment is required.

How stomatal conductance varies with water potential

There is a strong correlation between stomatal conductance and plant water potential: as plant water potential becomes more negative, stomatal conductance decreases. Some species are sensitive and show a rapid decrease in stomatal conductance; other species exhibit a slower decrease.

Plant physiologist refer to P50 as a value that clearly defines a species’ tolerance to dehydration. One definition of P50 is the plant water potential value at which stomatal conductance is 50% of its maximum rate. P50 is also defined as the point at which hydraulic conductance is 50% of its maximum rate. Klein (2014) summarized the relationship between stomatal conductance and plant water potential for 70 plant species (Figure 1). Klein’s research found that there is not a single P50 for all species, rather there is a broad spectrum of P50 values (Figure 1).

Leaf water potential chart

Figure 1. The relationship between stomatal conductance and leaf water potential for 70 plant species. The dashed red lines indicate the P80 and P50 values. The irrigation refill point can be determined where the dashed red lines intersect with the data on the graph. Image has been adapted from Klein (2014), Figure 1b.

Taking advantage of P50

The strong, and universal, relationship between stomatal conductance and water potential is vital information for growers. A stomatal conductance versus water potential relationship can be quickly, and easily, established by any grower for their specific crop. However, as growers need to maintain optimum plant hydration levels for growth and yield, the P50 value should not be used as this is too dry. Rather, research has shown a more appropriate value is possibly the P80 value. That is, the water potential value at the point that stomatal conductance is 80% of its maximum.

Irrigation Curves – a rapid assessment of plant hydration

Research by Edaphic Scientific and University of Queensland has established a technique that can rapidly determine the P80 value for plants. This is called an “Irrigation Curve” which is the relationship between stomatal conductance and hydration that indicates an optimal hydration point for a specific species or variety.

Once P80 is known, this becomes the set point at which plant hydration should not go beyond. For example, a P80 for leaf water potential may be -250 kPa. Therefore, when a plant approaches, or reaches, -250 kPa, then irrigation should commence.

P80 is also strongly correlated with soil water potential and, even, soil volumetric water content. Soil water potential and/or content sensors are affordable, easy to install and maintain, and can connect to automated irrigation systems. Therefore, establishing an Irrigation Curve with soil hydration levels, rather than plant water potential, may be more practical for growers.

Example irrigation curves

Irrigation curves were created for a citrus (Citrus sinensis) and macadamia (Macadamia integrifolia). Approximately 1.5m tall saplings were grown in pots with a potting mixture substrate. Stomatal conductance was measured daily, between 11am and 12pm, with an SC-1 Leaf Porometer. Soil water potential was measured by combining data from an MPS-6 (now called TEROS 21) Matric Potential Sensor and WP4 Dewpoint Potentiometer. Soil water content was measured with a GS3 Water Content, Temperature and EC Sensor. Data from the GS3 and MPS-6 sensors were recorded continuously at 15-minute intervals on an Em50 Data Logger. When stomatal conductance was measured, soil water content and potential were noted. At the start of the measurement period, plants were watered beyond field capacity. No further irrigation was applied, and the plants were left to reach wilting point over subsequent days.

Irrigation curves for citrus and macadamia based on soil water potential measurements

Figure 2. Irrigation Curves for citrus and macadamia based on soil water potential measurements. The dashed red line indicates P80 value for citrus (-386 kPa) and macadamia (-58 kPa).

Figure 2 displays the soil water potential Irrigation Curves, with a fitted regression line, for citrus and macadamia. The P80 values are highlighted in Figure 2 by a dashed red line. P80 was -386 kPa and -58 kPa for citrus and macadamia, respectively. Figure 3 shows the results for the soil water content Irrigation Curves where P80 was 13.2 % and 21.7 % for citrus and macadamia, respectively.

Soil Water Content Charts

Figure 3. Irrigation Curves for citrus and macadamia based on soil volumetric water content measurements. The dashed red line indicates P80 value for citrus (13.2 %) and macadamia (21.7 %).

From these results, a grower should consider maintaining soil moisture (i.e. hydration) above these values as they can be considered the refill points for irrigation scheduling.

Further research is required

Preliminary research has shown that an Irrigation Curve can be successfully established for any plant species with soil water content and water potential sensors. Ongoing research is currently determining the variability of generating an Irrigation Curve with soil water potential or content. Other ongoing research includes determining the effect of using a P80 value on growth and yield versus other methods of establishing a refill point. At this stage, it is unclear whether there is a single P80 value for the entire growing season, or whether P80 shifts depending on growth or fruiting stage. Further research is also required to determine how P80 affects plants during extreme weather events such as heatwaves. Other ideas are also being investigated.

For more information on Irrigation Curves, or to become involved, please contact Dr. Michael Forster: [email protected]

Reference

Klein, T. (2014). The variability of stomatal sensitivity to leaf water potential across tree species indicates a continuum between isohydric and anisohydric behaviours. Functional Ecology, 28, 1313-1320. doi: 10.1111/1365-2435.12289

Download the “Researcher’s complete guide to soil moisture”—>

Download the “Researcher’s complete guide to water potential”—>

Get more information on applied environmental research in our